Heavy metal such as Cr, Fe, Zn, Mn, Ni, Pb, Cu and Cd were investigated in a medicinally important plant, Eclipta alba L. as well as in the soil it was grown using atomic absorption spectrophotometer. The plant samples were collected from their natural habitat at three different locations of Peshawar, Pakistan. The whole plant materials (roots, stems and leaves) were found to contain all heavy metals except Cd, which corresponds to their concentration in the soil it was grown. Among all the heavy metals, Fe was found to be at the highest level (8.95 to 27.7 mg/kg) followed by Mn (0.44 to 14.0 mg/kg) and Zn (1.04 to 4.50 mg/kg), while the rest of metals were at low concentration. The present study showed that E. alba L. is suitable for the control of environmental pollutants such as heavy metals, however, for medicinal purposes; it should be collected from those areas, which are not contaminated with heavy metals. The purpose of the current study was to standardize various indigenous medicinal plants for heavy metals contamination and to make awareness among the public regarding its safer use and collection areas, containing high level of heavy metals and their adverse health affects.